Hi Jiemin,

You have atoms sitting on top of each other in your model. They are listed just above the mentioned error message. Please check your model and get rid of these atoms.

Best regards,
Oleg Sobolev.

On Fri, Sep 22, 2017 at 9:16 AM, Jiemin Zhao <zhao447@purdue.edu> wrote:

Hi，

I got an error message when I try to refine a molecular replacement result. It says "number of nonbonded interaction distances<0.001:10. Please inspect the out put above(or in the log window) and correct the input model file."
Could you help me with this problem? The error happens when I add Mg to pdb file.

Thanks!

Best regards,
Jiemin



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