Hi,

Could you send the log file (not necessarily to the list)?  The interesting one would be

AutoMR_run_*_/AutoMR_run_*_1.log

This might give a hint about where you're running out of memory.  Phaser has gradually been getting better in its memory usage, so I'm surprised that something that worked before isn't working now.

Thanks!

Randy Read

On 18 Feb 2011, at 01:00, Erik R. Kish-Trier wrote:

Hi,

I am getting the following error from AutoMR, which I am fairly certain is due to the deficiencies of my machine:

Python(2624) malloc: *** mmap(size=1665024000) failed (error code=12)
*** error: can't allocate region
*** set a breakpoint in malloc_error_break to debug

While using the prior release of phenix, I was able to get a similar job to complete, which makes me curious.

I am running phenix 1.7-650 (GUI) on an Intel Mac with 4GB of RAM and OS 10.6.6.

Any suggestions?

Thanks!

Erik

------
Randy J. Read
Department of Haematology, University of Cambridge
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