Hello all,

Thanks for your reply. I checked the content in the bootstrap.py. It seems that there is no anonymous method for phenix and xfel and cciuser option is only for developers. It seems that the only way is enter the password and download the source and compile from the downloaded source.

Cheers,

Taimin

From Windows 10 Email Application

From: Billy Poon
Sent: Wednesday, November 16, 2016 10:02 PM
To: R. D. Oeffner
Cc: Taimin Yang; PHENIX user mailing list
Subject: Re: [phenixbb] Why can't I use bootstrap.py in cctbx to compilephenix?

Hi Taimin,

Also, you need to accept the licensing terms for Phenix before you can download it (http://www.phenix-online.org/phenix_request/index.cgi). You have to use the email address from your academic institution.

You will then get a password which will allow you to download Phenix. We have precompiled packages or you can download the source and compile Phenix yourself.

--

Billy K. Poon

Research Scientist, Molecular Biophysics and Integrated Bioimaging

Lawrence Berkeley National Laboratory

1 Cyclotron Road, M/S 33R0345

Berkeley, CA 94720

Tel: (510) 486-5709

Fax: (510) 486-5909

Web: https://phenix-online.org

On Wed, Nov 16, 2016 at 12:39 PM, R. D. Oeffner <[email protected]> wrote:

I don't think building Phenix with bootstrap is yet possible using only anonymous access to all the necessary repositories. Many repositories require authentication. However, it is possible to rebuild the Phenix C++ libraries in an existing Phenix installation.

Regards,

Rob

--
Robert Oeffner, Ph.D.
Research Associate, The Read Group
Department of Haematology,
Cambridge Institute for Medical Research
University of Cambridge
Cambridge Biomedical Campus
Wellcome Trust/MRC Building
Hills Road
Cambridge CB2 0XY

www.cimr.cam.ac.uk/investigators/read/index.html
tel: +44(0)1223 763234
mobile: +44(0)7712 887162
-----Original Message----- From: Taimin Yang
Sent: Wednesday, November 16, 2016 8:20 PM
To: [email protected]
Subject: [phenixbb] Why can't I use bootstrap.py in cctbx to compile phenix?

Dear Professor,


My name is Taimin Yang and I am a PhD student in Stockholm University. I try to compile my own phenix using bootstrap.py but here is the error information:


root@Linux-main:/usr/local/crystallography_software/phenix# python bootstrap.py --builder=phenix --with-python=/usr/local/anaconda2/bin/python hot update build
Performing actions: hot update build
Traceback (most recent call last):
 File "bootstrap.py", line 2034, in <module>
   run()
 File "bootstrap.py", line 2029, in run
   enable_shared=options.enable_shared,
 File "bootstrap.py", line 926, in __init__
   map(self.add_module, self.get_codebases())
 File "bootstrap.py", line 1051, in add_module
   action = MODULES.get_module(module)().get_url(auth=self.get_auth())
 File "bootstrap.py", line 553, in get_url
   raise Exception('No anonymous access method defined for module: %s. Try with --%s'%(self.module, e.args[0]))
Exception: No anonymous access method defined for module: chem_data. Try with --cciuser

What should I do to compile my own phenix?
Thank you very much.

Best regards,
Taimin

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