Dear all,
I'm trying to get rosetta_refine working on ubuntu 12.04 LTS.
This was the (latest) way I tried it:
1) Downloaded phenix-dev-1523 binary & installed it via
installer in /usr/local/science/phenix4rosetta/phenix-dev-1523
2) Downloaded rosetta 2031wk42 and extracted it in
/usr/local/science/phenix4rosetta/rosetta_2013wk42_bundle
3) Inserted into phenix_env.sh
export
ROSETTA_BIN=/usr/local/science/phenix4rosetta/rosetta_2013wk42_bundle/main/source/bin
export
PHENIX_ROSETTA_PATH=/usr/local/science/phenix4rosetta/rosetta_2013wk42_bundle/
export
ROSETTA_BIN=/usr/local/science/phenix4rosetta/rosetta_2013wk42_bundle/main/database
4) sources phenix_env.sh
5) build the interface via
rosetta.build_phenix_interface
nproc=4
6) exceute the refinement via phenix.rosetta_refine phasermodel.pdb
data.mtz nproc=4
The programm runs fine, up to the point where it should generate
models via rosetta, it then stops and crashes.
I have attached some logfiles
Has anyone managed to run rosetta_refine on Ubuntu? Which phenix and
rosetta versions did you use? Ist there anything wrong on my above
mentioned build protocol?
I'm thankful for any help.
Regards,
Jan Gebauer
--
Dr. Jan Gebauer
AG Prof. Baumann
Institut für Biochemie / Uni-Köln
Otto-Fischer-Str. 12-14 / 50674 Köln
Fon: +49 (221) 470 3212
Fax: +49 (221) 470 5066
http://px.uni-koeln.de/