Hi Francis,
You might have to open the cif file and change bond angles and restrains where you think the molecule is distorted. 
Shya

On Fri, Aug 26, 2011 at 11:03 AM, Francis E Reyes <Francis.Reyes@colorado.edu> wrote:
Hi all

I've got 3.0A data and I'm ending up with distorted ligand geometry in phenix.refine. The model is complete and fitting the ligand is the final step (refined with individual_sites and individual_sites_real_space as suggested by an earlier posting). I've tried with a wxc_scale of 0.001 and it still looks wonky (tetrahedral C's not being so, etc).

My cif is coming from phenix's internal db.

Any suggestions?

F



---------------------------------------------
Francis E. Reyes M.Sc.
215 UCB
University of Colorado at Boulder





_______________________________________________
phenixbb mailing list
phenixbb@phenix-online.org
http://phenix-online.org/mailman/listinfo/phenixbb