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8 Apr
2020
8 Apr
'20
9:31 p.m.
Hi Nicolas,
We had a question regarding how the phenix.real_space_refine works when used to refine CryoEM models with hydrogens: are hydrogens treated as riding or are they explicitly refined?
yes, they are riding (although the way real-space refinement work in phenix.real_space_refine it doesn't matter!). Also, they are not included into map target function calculation. Pavel