Hi Rebecca, The sequence file should be able to contain any number of separate sequences. You can tell how many have been read in for actual model-building when running AutoSol by looking at /net/sigma/raid1/scratch1/terwill/misc/junk/wt056/AutoSol_run_1_/TEMP0/build_xxx/initial_build_cycle_1.log (xxx=solution number) which if I put in 3 dummy sequences to seq.dat gives me: Read 3 chains from file TEMP_seq.dat CHAIN 1 with 7 residues: starting at residue 1 QLMDMRD CHAIN 2 with 8 residues: starting at residue 1 APPTTTTA CHAIN 3 with 10 residues: starting at residue 1 QFRTAAWWWW All the best, Tom T
Dear phenix community:
I ran AutoBuild.dat with a seq.dat file that has 3 separate sequences. Chains A and B were built, but chain C was not, even though there is density for the third chain. It occurred to me that only two of the three chains may have been read in. I seem to recall that seq.dat can be a maximum of two sequences, but am not sure.
So, is there a limit to the number of sequences that can be present in seq.dat and if so, what is the limit.
Thanks in advance, Rebecca _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb