I think that the missing 'task' tab is a feature. Look under 'projects' -> 'preferences' to have the task window displayed.
Yes, a feature...
One way of improving maps is by using the autobuild wizard. If you run the gui, you might (or not) want to specify that you want to use 'rebuild in place' (builds 'around' your current chains) and that you would like to use the 'full omit' procedure to reduce model bias. This last option might take some time though!
If the plain run with 4-fold ncs does not work, you might try the full-omit procedure. I would expect the ncs to help a lot here.
The wizard might be smart enough to pick up on the 4 fold NCS by the presence of the model and use that during density modification, although I am not sure about that. I think it will use the NCS information during refinement.
The wizards should find the NCS from the model and apply it in both density modification and refinement, yes... -Tom T
HTH
Peter
Stephen Graham wrote:
Hi all,
I recently (well, yesterday) installed the latest beta of phenix and everything is working great from the command line (which is how I use phenix 99.9% of the time).
However, I fired up the GUI and found that the 'Tasks' tab appears to be missing from the 'Strategy Interface'. Is this a bug, a manifestation of an installation problem, or a feature?
And... I was trying to use the GUI for prime-and-switch phasing to improve the maps for a partly-refined MR solution. What is the recommended path for creating HL coefficients from a model (from simulated annealing in phenix.refine) so that I can use the GUI's resolve 'prime-and-switch' strategy? Or is there an even better way of removing model bias and density-improving a big, low-res, MR-solved structure with 4-fold NCS in phenix?
Thanks,
Stephen
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