Tom,
I thought that I just overlooked the s_annealing parameter, but this
doesn't seem to be the case. I don't seem to have this parameter in my
list. I am using the latest version of PHENIX loaded onto a LINUX
workstation.
Could it be that the parameter is missing or that I may have missed
something during the installation, since I am a newbie to Linux?
Thanks again in advance for all your help!
Cheers,
Nick
----- Original Message -----
From: "Tom Terwilliger"
Hi Nick,
Yes, you can modify the parameter "s_annealing" by going to the menu at the bottom right corner of the Parameters (inputs) screen labelled
SET VARIABLE (Advanced users)
and selecting "s_annealing"
then click "CONTINUE" and a screen will come up allowing you to choose Yes or No to s_annealing. Then when you click CONTIUE the wizard will continue whatever it was doing.
You can set this variable when you are setting up your run; do it any time before the last screen comes up.
All the best, Tom t
At 03:54 PM 7/14/2006 -0400, Noinaj wrote:
Hi,
I am running AUTOBUILD on a friend's structure, and noticed in the log file the s_annealing parameter set to false. Is it possible to set this parameter to true when doing an AUTOBUILD run, say to do s_a after each build cycle? I have read that I can use phenix.refine at the command line to run s_annealing, but didn't know if I could modify this option within the wizards. I checked out the list of parameters which I am allowed to change, but didn't see s_anneal anywhere.
Thanks for all replies in advance!
Cheers, Nick
________________________________________
Nicholas Noinaj University of Kentucky School of Medicine Department of Molecular and Cellular Biochemistry Biomedical Biological Sciences Research Building, Rm 236 741 S. Limestone Lexington, Ky 40536 Lab: 859-323-8183 Home: 859-228-0978 mailto:[email protected][email protected] www.noinaj.com
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