Re: [phenixbb] chain and residue ID in phenix.erraser

What would be really helpful is to make this tool to comply with all other Phenix tools that use Phenix atom selection syntax. It is confusing if different tools within the same software package use different languages to refer to atoms. Pavel On 11/8/17 11:34, Ursula Schulze-Gahmen wrote:

Yes, chainID:residue number (N:32) is working. Thanks.

It might be helpful for others to include this syntax in the error message.

In general, erraser is working great for RNA modelling at medium to low resolution!

On Mon, Nov 6, 2017 at 9:43 PM, Andy Watkins mailto:[email protected]> wrote:

Try N:32, i.e., separate chain and residue number with a colon. I'm not sure what other formats might be supported, but the colon-including format definitely is.

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On Mon, Nov 6, 2017 at 8:30 PM, Ursula Schulze-Gahmen mailto:[email protected]> wrote:

I am trying to run phenix.erraser, but I am not able to define the single residue for rebuilding correctly. I am getting error messaheg: Please make sure that you include both the chain ID and residue number, for example 'A15'. I want to rebuild nucleotide G32 in chain N, and defined the residue as N32. That is not correct. What would be the correct syntax for this case?

Ursula

-- Ursula Schulze-Gahmen, Ph.D. Project Scientist UC Berkeley, QB3 360 Stanley Hall #3220 Berkeley, CA 94720-3220 (510) 643 9491 tel:%28510%29%20643-9491

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-- Ursula Schulze-Gahmen, Ph.D. Project Scientist UC Berkeley, QB3 360 Stanley Hall #3220 Berkeley, CA 94720-3220 (510) 643 9491

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