On Wed, Sep 9, 2009 at 3:22 PM, Maia Cherney <chern@ualberta.ca> wrote:

Hi,

I am trying to find the answer to a question that was discussed long
time ago at this forum, but there is no mechanism to find old discussions.

You have to go through each month and figure out from the subjects where
was a particular discussion.

Could you, the phenix team, make it easier to find answers to those
questions that had been answered previously.

I remember, there was a question how to generate maps without
refinement. I finished the refinement, but I need a map (in explor
format) to show the 2fo-fc density in the publication.

Maia





Pavel Afonine wrote:
> Hi Tirumala,
>
> I agree, you are not the first who confused by this and an example right
> in the message would help.
>
> First, your MTZ file contains the following data: �(FP,SIGFP) and
> (Fav,SIGFav) and it is your choice to select the one that you want to
> use in refinement.
>
> Second, once decided on the data - for example it is FP, then just add
> to your command line this:
>
> refinement.input.xray_data.labels=FP
>
> or, which is the same
>
> xray_data.labels="FP,SIGFP"
>
> Pavel.
>
>
>
> On 9/9/09 11:10 AM, Tirumala Kumar Chowdary wrote:
>
>> Hi,
>>
>> I am trying to run phenix.refine with a sharp output MTZ file (column
>> labels �H K L NUMORB FB PHIB FOM HX HY FH PHIH FP SIGFP HLA HLB HLC HLD
>> HL0 Fcent PHIcent FOMcent Fmap PHImap FHref PHIHref Fav SIGFav).
>>
>> Phenix.refine stopped at
>>
>> 'Multiple equally suitable arrays of observed xray data found.
>>
>> Possible choices:
>> � sharp_sad_se_eden.mtz:FP,SIGFP
>> � sharp_sad_se_eden.mtz:Fav,SIGFav
>>
>> Please use refinement.input.xray_data.labels'
>>
>> Can someone tell me on how to use this
>> 'refinement.input.xray_data.labels' and how to specify which column
>> labels to use. There is nothing written in the documentation about it.
>>
>> Thanks
>> Tirumal
>>
>>
>>
>>
>> _______________________________________________
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>> phenixbb@phenix-online.org
>> http://www.phenix-online.org/mailman/listinfo/phenixbb
>>
>>
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>
>
>

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