I agree.
The fact that two "crystals forms" appear, with related unit cells:
P422 data:
unit_cell = 191.6999969 191.6999969 311.0539856 90 90 90
space_group = "P 4 2 2"
I422 data:
unit_cell = 191.783 191.783 103.775 90 90 90
space_group = "I 4 2 2"
indicated to me you have mis-indexed the P422 data. It is likely I422.
Kelly
*******************************************************
Kelly Daughtry, Ph.D.
Post-Doctoral Fellow, Raetz Lab
Biochemistry Department
Duke University
Alex H. Sands, Jr. Building
303 Research Drive
RM 250
Durham, NC 27710
P: 919-684-5178
*******************************************************
On Mon, May 7, 2012 at 12:18 PM, Nathaniel Echols <
[email protected]> wrote:
On Mon, May 7, 2012 at 8:46 AM, Kelly Daughtry <[email protected]> wrote:
Looking at the P422 data, it look like you have pseudo translational symmetry.
Did you try processing this data as I422?
From the P422_xtriage.log:
The full list of Patterson peaks is:
x y z height p-value(height)
( 0.500, 0.500, 0.165 ) : 78.635 (6.634e-07)
( 0.000, 0.000, 0.330 ) : 56.292 (2.795e-05)
( 0.500, 0.500, 0.497 ) : 30.920 (1.207e-03)
One word of caution: an exceptionally high off-origin peak can mean
that the unit cell was measured too large, and you've integrated extra
reflections that are really non-existent. (I'm not sure what the
threshold for this is, but 80% seems pretty large.) Splitting and
various indexing artifacts can sometimes lead to this. I'd recommend
running labelit.index on the images and seeing what it thinks the
lattice should be.
-Nat
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