Agnes<div><br></div><div>It should link automatically if the criteria as listed in the previous post are followed. You can check it in the .geo file. I&#39;m happy to take a look at it if you send me the model or even just the three residues involved on list.</div>

<div><br></div><div>Nigel</div><div><br></div><div>NB. Any files sent to me will be held in strictest confidence.<br><br><br><div class="gmail_quote">On Wed, Nov 14, 2012 at 10:07 AM, Agnes Thiane Pereira Machado <span dir="ltr">&lt;<a href="mailto:agnes_thiane@hotmail.com" target="_blank">agnes_thiane@hotmail.com</a>&gt;</span> wrote:<br>

<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">


<div><div dir="ltr">



<div dir="ltr"><br><div><div dir="ltr"><div><blockquote><div dir="ltr">Hi 
        <br>
         We are trying to refine a protein structure with a (covalently)
        <br>
         modified residue. The colosest discussion to our problem is:<br>
        <br>
      </div>
    </blockquote>
        
    <a href="http://www.phenix-online.org/pipermail/phenixbb/2010-August/015629.html" target="_blank">http://www.phenix-online.org/pipermail/phenixbb/2010-August/015629.html</a><br>
    <blockquote>
      <div dir="ltr"> <br>
         We ran:<br>
        <br>
        <pre>phenix.elbow --residue SSC ourmodel.pdb</pre>
      </div>
    </blockquote>
    <blockquote>
      <div dir="ltr">
        <pre> And read the due cif file at phenix refinement. The residue by itself is OK, but we were 
</pre>
         not able to perform the peptide bond between C and N.<br>
        How to complete the .cif file such that it has due restraints
        for <br>
         the peptide bond with this modified residue?<br>
        <br>
         Agnes<br>
        <br>
        <br>
      </div>
    </blockquote>
    <br></div> 		 	   		  </div></div></div>
 		 	   		  </div></div>
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<br></blockquote></div><br><br clear="all"><div><br></div>-- <br>Nigel W. Moriarty<br>Building 64R0246B, Physical Biosciences Division<br>Lawrence Berkeley National Laboratory<br>Berkeley, CA 94720-8235<br>Phone : 510-486-5709     Email : NWMoriarty@LBL.gov<br>

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</div>