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Hi Tatiana,
This may be a little difficult to debug on a cluster...but here goes.
The error message you got comes from
AutoBuild_run_1_/TEMP0/AutoBuild_run_1_/TEMP0/temporary.com
You can see exactly what happens with that command file if you can log on
to a machine in the cluster:
cd AutoBuild_run_1_/TEMP0/AutoBuild_run_1_/TEMP0
then copy temporary.com to test.com and edit test.com to replace all the
material at the top of the file after #!/bin/csh -f (something like this
below) all the way down to "outputdir":
delete all this:
-------------
setenv CCP4_OPEN UNKNOWNsetenv SOLVEDIR
/Users/terwill/unix/PHENIX/phenix-1.4-67/solve_resolve/ext_ref_files
setenv SYMOP
/Users/terwill/unix/PHENIX/phenix-1.4-67/solve_resolve/ext_ref_file
s/symop.lib
/Users/terwill/unix/PHENIX/phenix-1.4-67/build/mac-intel-osx/solve_resolve/exe/r
esolve <<EOD > AutoBuild_run_1_/TEMP0/image.log
access_file mirima.dat
workdir AutoBuild_run_1_/TEMP0
outputdir /Users/Shared/unix/transfer/shiven/AutoBuild_run_6_
-------------
replace with:
phenix.resolve --huge < Hello! I'm trying to run AutobuildWizard on distant computer cluster.
Runs failed. In Autobuild log file there is a message: *TRIED resolve_giant ...NEED A BIGGER VERSION...
TRIED resolve ...NEED A BIGGER VERSION...
TRIED resolve_giant ...NEED A BIGGER VERSION...
TRIED resolve_huge ...NEED A BIGGER VERSION...
child process stderr output:
command: 'AutoBuild_run_1_/TEMP0/temporary.com'
Sorry, not enough memory for RESOLVE
----------------------------------
TRIED resolve_extra_huge ...but not OK ********************************************************************************
Failed to carry out AutoBuild_set_up_build:
********************************************************************************
*
Some Autobuild runs were ok, some stopped with that error message.
What am I doing wrong? I installed Phenix1.4-3, locally to my home folder, run it from script
file
in queue.
As I found this Linux computer cluster has next parameters -
1 login node:
-Sun SunFire v20z 1U Rackmount Box
-Dual 2.4 GHz AMD Opteron Processors
-8 GB of ECC RAM Could you advise something to start with to find a problem? Sincerely,
Tanya
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