But my case is that no homology model for the target protein and it should be built directly from the em map. What should I do in this case ?
Hi Wei,
cutting out a box with model and map around it may be a solution for
your case. A tool for this is phenix.map_box or its GUI equivalent.
Pavel
P.S.: phenix.real_space_refine does this internally so 'irrelevant'
box size never affects runtime of refinement.
Dear all,
The cell parameter of the EM
map is always too large, which will make the model building
program running very slow.
But in factor, the structure
is a smal part of cell. So can I smaller the cell parameter
when I use phenix.map_to_structure_factors to convert the EM
map to mtz file.
Thank
a lot!
Wei
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