Rhys

I can't speak to this exact dynamic library problem being wholly Rosetta's fault as I've seen this error in other situations with binaries being mismatched. This is a problem with your machine not being able to run the Rosetta binaries. You may have to fix the libraries on your machine or move to a machine that has the correct libraries.

I am updating the docs but you should download Phenix dev-2313 and the Rosetta 2016.02 build. Follow the instructions for installing Rosetta refine (which will compile Rosetta so the source bundle is fine). This is more than what is required for MR-Rosetta but it is required for Rosetta refine which you may want in the future. 

Cheers

Nigel

---

Nigel W. Moriarty
Building 33R0349, Physical Biosciences Division
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709     Email : NWMoriarty@LBL.gov
Fax   : 510-486-5909       Web  : CCI.LBL.gov

On Mon, Feb 22, 2016 at 10:33 AM, Paul Adams <pdadams@lbl.gov> wrote:

If I remember correctly (quite possibly not), this is to do with a newer binary being run on a older version of the OS. Is this possible? We are in the process of updating the Rosetta/Phenix installation instructions, so it might be that compiling Rosetta with Phenix might fix the problem (but does require a compiler). Nigel might have some thoughts.

> On Feb 22, 2016, at 6:13 AM, Rhys Grinter <rhys.grinter@MONASH.EDU> wrote:
>
> Dear all,
>
> I'm currently trying to improve an model for a difficult MR problem using Rosetta-MR,
>
> When the program gets to the Rebuild stage it fails with the following message:
> Error message:
>
> child process stderr output:
>
>   command: 'sh  .../MR_ROSETTA_17/GROUP_OF_ROSETTA_REBUILD_1/RUN_1/REBUILD_IN_SETS_1/RUN_4/WORK_1/run_rebuild.sh"'
>
>   .../MR_ROSETTA_17/GROUP_OF_ROSETTA_REBUILD_1/RUN_1/REBUILD_IN_SETS_1/RUN_4/WORK_1/run_rebuild.sh: line 5:  8996 Trace/BPT trap: 5       "/Applications/Rosetta/main/source/bin/mr_protocols.macosclangrelease" @"rebuild.flags" > "rebuild.log" 2>&1
>
> Failed to run REBUILD
>
> Sorry: Failed to run REBUILD...see log file in .../MR_ROSETTA_17/GROUP_OF_ROSETTA_REBUILD_1/RUN_1/REBUILD_IN_SETS_1/RUN_4/WORK_1/rebuild.log
>
> Sorry: mr_rosetta failed...
>
> Sorry routine failed
>
> Please see log file for full error message
>
>
> In the rebuild logfile:
>
> dyld: lazy symbol binding failed: Symbol not found: ___sincos_stret
>   Referenced from: /Applications/Rosetta/main/source/bin/mr_protocols.macosclangrelease
>   Expected in: /usr/lib/libSystem.B.dylib
>
> dyld: Symbol not found: ___sincos_stret
>   Referenced from: /Applications/Rosetta/main/source/bin/mr_protocols.macosclangrelease
>   Expected in: /usr/lib/libSystem.B.dylib
>
> Has anyones experienced this error?
>
> Cheers,
>
> Rhys
>
> --
> Dr Rhys Grinter
> Sir Henry Wellcome Fellow
> Monash University
> +61 (0)3 9902 9213
> +61 (0)403 896 767

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--
Paul Adams
Interim Division Director, Molecular Biophysics & Integrated Bioimaging, Lawrence Berkeley Lab
Division Deputy for Biosciences, Advanced Light Source, Lawrence Berkeley Lab
Adjunct Professor, Department of Bioengineering, U.C. Berkeley
Vice President for Technology, the Joint BioEnergy Institute
Laboratory Research Manager, ENIGMA Science Focus Area

Building 33, Room 347
Building 80, Room 247
Building 978, Room 4126
Tel: 1-510-486-4225, Fax: 1-510-486-5909
http://cci.lbl.gov/paul

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