OSError : [Errno 2] No such file or directory: '/home/clevelandt/data/MX/181016_P1_merge/phenix/.phenix/tmp/10.libtbx_info.LOCK' Traceback: File "/ibbr/phenix-1.14-3228/modules/cctbx_project/libtbx/runtime_utils.py", line 179, in run return_value = self.target() File "/ibbr/phenix-1.14-3228/modules/cctbx_project/libtbx/runtime_utils.py", line 74, in __call__ result = self.run() File "/ibbr/phenix-1.14-3228/modules/phenix/phenix/refinement/runtime.py", line 79, in run refine_object = self._run(args, callback) File "/ibbr/phenix-1.14-3228/modules/phenix/phenix/refinement/runtime.py", line 92, in _run call_back_handler=callback) File "/ibbr/phenix-1.14-3228/modules/phenix/phenix/refinement/command_line.py", line 152, in run call_back_handler=call_back_handler) File "/ibbr/phenix-1.14-3228/modules/phenix/phenix/refinement/driver.py", line 1169, in run call_back_handler = call_back_handler).result File "/ibbr/phenix-1.14-3228/modules/phenix/phenix/refinement/strategies.py", line 132, in __init__ monitors.collect(step = "0 :", model = self.model, fmodels = self.fmodels) File "/ibbr/phenix-1.14-3228/modules/cctbx_project/mmtbx/refinement/__init__.py", line 47, in collect rigid_body_shift_accumulator = rigid_body_shift_accumulator) File "/ibbr/phenix-1.14-3228/modules/cctbx_project/mmtbx/refinement/print_statistics.py", line 215, in collect self.call_back(model, fmodel, method=step) File "/ibbr/phenix-1.14-3228/modules/cctbx_project/mmtbx/refinement/print_statistics.py", line 219, in call_back self.call_back_handler(self, model, fmodel, method) File "/ibbr/phenix-1.14-3228/modules/phenix/phenix/refinement/runtime.py", line 170, in __call__ accumulate=True) File "/ibbr/phenix-1.14-3228/modules/cctbx_project/libtbx/callbacks.py", line 93, in __call__ cached=cached) File "/ibbr/phenix-1.14-3228/modules/cctbx_project/libtbx/runtime_utils.py", line 205, in callback_wrapper cached=cached)) File "/ibbr/phenix-1.14-3228/modules/cctbx_project/libtbx/runtime_utils.py", line 250, in callback_other os.remove(self.info_lock) Platform info: __FILE__ = /home/builder/slave/phenix-nightly-intel-linux-2_6-x86_64-centos6/modules/cctbx_project/boost_adaptbx/meta_ext.cpp __DATE__ = Aug 11 2018 __TIME__ = 00:48:19 __TIMESTAMP__ = Mon May 14 23:23:22 2018 __x86_64__ __linux __GNUC__ = 4 __GNUC_MINOR__ = 4 __GNUC_PATCHLEVEL__ = 7 boost::python::cxxabi_cxa_demangle_is_broken(): false __GXX_WEAK__ = 1 __LP64__ = 1 __VERSION__ = 4.4.7 20120313 (Red Hat 4.4.7-18) FE_INEXACT = 32 FE_DIVBYZERO = 4 FE_UNDERFLOW = 16 FE_OVERFLOW = 8 FE_INVALID = 1 FE_ALL_EXCEPT = 61 __SSE2__ = 1 BOOST_LIB_VERSION = 1_63 PY_VERSION = 2.7.15 PYTHON_API_VERSION = 1013 sizeof(bool) = 1 sizeof(short) = 2 sizeof(int) = 4 sizeof(long) = 8 sizeof(std::size_t) = 8 sizeof(void*) = 8 sizeof(long long) = 8 sizeof(float) = 4 sizeof(double) = 8 sizeof(long double) = 16 sizeof(boost::int32_t) = 4 sizeof(boost::uint32_t) = 4 sizeof(wchar_t) = 4 __PTRDIFF_TYPE__ Py_USING_UNICODE sizeof(PY_UNICODE_TYPE) = 2 _OPENMP = 200805 gnu libc version: 2.17 BOOST_ADAPTBX_TYPE_ID_SIZE_T_EQ_UNSIGNED_LONG boost/TAG: None os.name: posix sys.platform: linux2 sys.byteorder: little platform.platform(): Linux-3.10.0-693.21.1.el7.x86_64-x86_64-with-centos-7.4.1708-Core platform.architecture(): ('64bit', 'ELF') floating_point_exceptions.division_by_zero_trapped: False floating_point_exceptions.invalid_trapped: False floating_point_exceptions.overflow_trapped: False number of processors: 32 Memory total: 134,928,052,224 Memory free: 90,739,843,072 import thread: OK "hello" = ['h', 'e', 'l', 'l', 'o'] u"hello" = ['h', '\x00', 'e', '\x00', 'l', '\x00', 'l', '\x00', 'o', '\x00'] u"\u00C5" = ['\xc5', '\x00'] as utf-8 = ['\xc3', '\x85'] LATIN CAPITAL LETTER A WITH RING ABOVE = Å