Never mind, it works using autobuild (phenix.autobuild data=data.mtz solvent_fraction=0.58 model=model_rs6_refine_001.pdb ps_in_rebuild=true maps_only=true) so this doesn’t really matter.
Best,
Oliver.
On Jun 13, 2014, at 7:42 AM, Oliver Clarke
Hi all,
I’m getting an error running phenix.prime_and_switch_map that I can’t figure out. It crashes shortly after F(model) initialization. The last part of the log and traceback is appended below - if anyone can figure out what I’m doing wrong I’d be very grateful!
I’m running dev-1702 on a Mac (not sure whether this is a mac specific issue though). This happens with multiple different pdb/mtz combinations, so I don’t think it is something specific to my files.
Best, Oliver.
Command: phenix.prime_and_switch_map model_rs6_refine_001.pdb model_rs6_refine_001.mtz debug=true
Error: ----------F(model) initialization----------
Twinning will be detected automatically. |--(resolution: 3.00 - 71.59 A, n_refl.=26875 (all), 5.48 % free)------------| | | | r_work= 0.2683 r_free= 0.3402 coordinate error (max.-lik. estimate): 0.58 A | | | | x-ray target function (ml) for work reflections: 5.858242 | |-----------------------------------------------------------------------------|
End of input processing Traceback (most recent call last): File "/Applications/PHENIX-dev-1702/Contents/phenix-dev-1702/build/mac-intel-osx-x86_64/../../phenix/phenix/command_line/prime_and_switch_map.py", line 160, in <module> run(sys.argv[1:]) File "/Applications/PHENIX-dev-1702/Contents/phenix-dev-1702/build/mac-intel-osx-x86_64/../../phenix/phenix/command_line/prime_and_switch_map.py", line 68, in run map_coeffs = fmodel.electron_density_map().map_coefficients( TypeError: electron_density_map() takes exactly 2 arguments (1 given)