hi,
we are using secondary structure restraints to enforce RNA base pairing.
it seems if we use insertion codes , it causes a crash with this error:

/usr/local/phenix-1.8.1-1168/cctbx_project/mmtbx/secondary_structure/bas
e_pairing.py", line 508, in identify_base_pairs
    basecode_1 = atoms[base_1[0]].fetch_labels().resname.strip()[0]
IndexError: Index out of range

we are using syntax like this:

refinement.secondary_structure.nucleic_acids {
base_pair {
  base1 = segid "WTF" and resseq   78
  base2 = segid "WTF" and resseq   98
}
base_pair {
  base1 = segid "WTF" and resseq   79
  base2 = segid "WTF" and resseq   97
}
base_pair {
  base1 = segid "WTF" and resseq   80A
  base2 = segid "WTF" and resseq   96
}
}

we also tried putting it in quotes with no luck
it works if we use resseq 80
this is with version
Version: 1.8.1
Release tag: 1168


thanks
jpd