Hi Agnieszka, currently the only way to make atom selections is to use Phenix atom selection syntax. To learn about atom selection syntax please refer to the following resources: http://phenix-online.org/documentation/reference/atom_selections.html#exampl... Pavel On 2/10/21 05:18, Agnieszka Kiliszek wrote:
Hi everyone,
I would like to generate polder maps in phenix of selected ligand molecules using mmCIF files. For me, the most convenient way of selecting atoms of ligand was to use "_struct_asym.id". Therefore I tried syntax selection segid but I received error "no atoms selected". In pymol similar syntax "segi" works for the same mmCIF file.
What can be the reason of the error? Is it a way to select atoms of ligand using "_struct_asym.id" in phenix.polder?
Best regards,
Agnieszka
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