Re: [phenixbb] map output from ncs_average

Hi Ursula, Can you try: phenix.pymol then as you and Nat mentioned: load ncs_average.map, format=ccp4 I tried this just now and it worked ok. If that fails, can you first run: phenix_regression.wizards.test_command_line_resolve_memory test_ncs_average cd test_ncs_average and then try the pymol load with that file (that's what I just did). All the best, Tom T On Dec 9, 2011, at 11:40 AM, Ursula Schulze-Gahmen wrote:

Yes, I used the same command. By the way, I can open the map file in Coot. I am thinking of updating my version of Pymol since I am using a relatively old version. Any other suggestion?

Ursula

On Fri, Dec 9, 2011 at 10:32 AM, Nathaniel Echols wrote: On Fri, Dec 9, 2011 at 10:28 AM, Ursula Schulze-Gahmen wrote:

...

I used ncs_average to create an averaged fo-fc map. From the manual I thought that the output map is a CCP4 map. I have however difficulties to read it into Pymol as ccp4 map. It is not recognized. Any suggestions?

What command did you use to load it in PyMOL? You might need to do this to get it to recognize the file type:

load ncs_average.map, format=ccp4

(PyMOL expects .ccp4 as the extension here - .map is assumed to be an XPLOR map. Most of the programs in PHENIX will use .ccp4 as the extension, but there are probably inconsistencies.)

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-- Ursula Schulze-Gahmen, Ph.D. Assistant Researcher UC Berkeley, QB3 356 Stanley Hall #3220 Berkeley, CA 94720-3220

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