Hi Shanti Pal,

this kind of outcome is definitely not expected. Could you please share map and model files and then I will investigate?

Thanks,
Pavel

On 8/3/20 16:02, Shanti Pal Gangwar wrote:
Dear all,
I am trying to refine a Cryo-EM map at a decent resolution. The model was fit into the map in chimera and refined against the same map in Real space refinement in Phenix but after the run, a significant part of the model moved out of the density.

I would appreciate any suggestion/strategy to solve this issue.

Thank you
Shanti Pal


           



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