Hi Pavel, 
When I marked explicitly 'no ano' in the gui (whenever I didn't want to use anomalous), this doubling on the output file was gone. As I recall it also depends on the labels one chooses to use from the data file. This was on older builds though.
Cheers,
Boaz

Boaz Shaanan, Ph.D.
Department of Life Sciences
Ben Gurion University of the Negev
Beer Sheva
Israel
---------- Forwarded message ----------
From: בעז שאנן <[email protected]>
Date: Oct 20, 2020 17:48
Subject: Re: [phenixbb] Number of unique reflections
To: Armando Albert <[email protected]>
Cc:

Hi, Assuming that you don't want to use anomalous differences during refinement, I found out that the easiest (and safest) way to avoid this duplication is to mark in the gui  'no anom' under options when you define the data file. There may be other ways but this has worked for me.
Stay safe,
Boaz


Boaz Shaanan, Ph.D.
Department of Life Sciences
Ben Gurion University of the Negev
Beer Sheva
Israel

On Oct 20, 2020 17:35, Armando Albert <[email protected]> wrote:
Dear all,
We have realise that the output  mtz and mmcif files duplicate the number of miller indices (the number of unique reflections) with respect to those in the mtz input file. We guessed that this correspond to the friedel pairs, but it is annoying for pdb submission, as the server warns that the observations measured are less that those used in the refinement.
What shall we do fro correct this issue?
Armando


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