Hi Jiemin,

I recently had a few errors of such, and while I can't remember which Phenix program spitted it out (Phaser or phenix.refine), the issue was my models from MODELLER. Simply deleting hydrogens by running

phenix.reduce -Trim insertpdbname.pdb >newpdbname.pdb

on the coordinate file fixes it for me.

I might be way off with your issue, but this is easy enough to try.

Engin

Hi,

I got an error message when I try to refine a molecular replacement result. It says Fatal problems interpreting model file: Number of atoms with unknown nonbonding energy type symbols: 18 Please edit the model file to resolve the problems and/or supply a CIF file with matching restraint definitions, along with apply-cif-modification and apply-cif-link parameter definitions if necessary.

Could you help me with this problem?

Thanks!

Best regards,

Jiemin

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