You can prepend your command with nohup: nohup my_command & All outputs will go to the nohup.out file. Even if you log out of the machine or your xterm is closed, your command will continue to run until it finishes or is killed by someone. This is a good practice for long running calculations. Regards. F. [email protected] wrote:
Thanks, I run the jobs in the comand line in the background using & after the command. For some reason reason phenix is the only program that still displays even with & which I don't understand. I will try entering "screen_output &"
-Yarrow
Thank you. I can't believe how easy that was. My phenix.maps problem
is solved. It works as it should. I was also having a problem in not getting a pdb or mtz to export for wxc optimization (see below) so I will rerun this tonight and hopefully everything will go smoothly. Thanks again. ... File "/usr/local/phenix-1.6-289/cctbx_project/libtbx/utils.py", line 666, in write file_object.write(str) IOError: [Errno 5] Input/output error This probably means you lost your "stdout" or "stderr", e.g. by starting phenix.refine and then closing the terminal window or GUI. In case you run from the command line and anticipate your terminal window may not survive the entire run, it is best done like this:
phenix.refine some.pdb some.mtz some.params >& screen_output &
If it happens when running from the GUI Nat may have more to say.
Ralf _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
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