Update: I re-run refinements using phenix-dev-1314 (nightly build from 2013-03-04) and the B-factors are now as expected (Bave ~20). Fwiw, it was necessary to reset all isotropic B-factors to 20 in the starting model. Thanks a lot for fixing this, Pavel. Oliv On 03/01/13 13:02, Pavel Afonine wrote:
Hi Phil,
this was the "odd special case" that is now (in next nightly build) covered. I don't know how often such case happens but it escaped me when I was implementing the original fix (sometime last summer).
Pavel
On 3/1/13 12:54 PM, Phil Jeffrey wrote:
Hello Pavel,
Could you give us some idea if this was some odd special-case situation or if there is some lingering issue with scaling in 1.8* and we should all be planning on updating. (e.g. I'm using phenix-1.8.1-1168).
Thanks Phil Jeffrey Princeton
On 3/1/13 3:29 PM, Pavel Afonine wrote:
Hello,
anyone who experienced similar problem please get next available nightly build version of Phenix (any version that is newer than today's one, which should be available in a day or a few days), and that should fix this problem. Please let me know otherwise.
Pavel
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