Re: [phenixbb] cif_as_mtz assertion error

Thanks. Good to know it's not just me. :) How might I know which structures do and don't require --use-model? I'm running cif_as_mtz on the whole PDB so I can then run model_vs_data. If I know when to use that switch and when not to, I can mend my script accordingly. Thanks. :) Eric On Wed, Jun 13, 2012 at 10:59 AM, Nathaniel Echols wrote:

On Wed, Jun 13, 2012 at 7:36 AM, Eric Williams wrote:

...

I'm trying to run phenix.cif_as_mtz on a large number of PDB entries, and several entries give me an assertion error. The example below is from 8icz, but the error always seems to be the same.

This is a bug (which one of us will fix ASAP), but if you omit the --use-model argument, it should avoid the step that's crashing. I haven't come across too many entries in the PDB that actually require this, especially among newer structures.

-Nat _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb