Hi Alex, Phenix GUI -> Model tools -> PDB Tools -> Options -> click on Occupancies -> in popped up window type in atom selection and choose one of three available actions (randomize..., set..., reset...) -> hit OK -> hit Run. I think that should do it. In the command line: phenix.pdbtools model.pdb occupancies.set=0.46 selection="chain A and resseq 1:2" Pavel On 4/13/15 6:46 AM, Alejandro Virrueta wrote:
Hello,
I was wondering if someone could show me a way to set the occupancy of a specific set of atoms to 0 using phenix.pdbtools.
I noticed here http://www.phenix-online.org/download/documentation/cci_apps/pdbtools.html#a... that there is no option under modify => occupancies to do an 'atom_selection'. Any help would be appreciated.
Cheers, Alex