Hi Mike, You can use our scripts for running DEN on a Linux cluster available at the CNS Wiki page for this (http://cns-online.org/wiki/index.php/DEN_Grid_Searches). If you have a Linux cluster, run the script as is. If you don't, as in your case, just edit the variable (in the "Edit seven variables below" section of the first script) from: my $use_cluster = 'Yes'; ## change it to NO if not using cluster to "NO". Thanks, Debanu. ------------------------------------- Debanu Das, Ph.D., Staff Scientist, JCSG Structure Determination Core, SSRL Structural Genomics Division, SLAC National Accelerator Laboratory, Menlo Park, CA 94025 ------------------------------------- -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Michael Thompson Sent: Tuesday, November 13, 2012 3:57 PM To: phenixbb Subject: [phenixbb] den_refine on cluster Hi All, Apologies if this is a naive question, but I would like to run DEN refinement and I notice the documentation says that it runs optimally on a machine with at least 30 processor cores. Is there any way to run DEN refinement on a SGE cluster as a batch job using something like run_command="qsub" as can be done with autobuild, etc.? Thanks, Mike -- Michael C. Thompson Graduate Student Biochemistry & Molecular Biology Division Department of Chemistry & Biochemistry University of California, Los Angeles [email protected] _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb