Dear Abhisek,
Version 1.10 is quite old and there have been several bug fixes and new features since then. We’re just about to release version 1.11 so the current nightly builds on the website should be quite stable. If you detect otherwise we would be interested to hear back.
Regards,
Robert
From: abhisek Mondal
Sent: Tuesday, November 1, 2016 5:07 PM
To: [email protected] ; [email protected]
Subject: RE: [phenixbb] phenix fails to configure on fedora 20
I'll try...
But, my concern is, when I tried to install the same version in my workstation it worked cool.
Is this some sort of issue with my laptop ?
Nightly builds are beta right ? Won't it cause any stability issue ?
On Nov 1, 2016 3:07 PM, wrote:
Have you tried one of the recent nightly builds or the centos5 version?
Rob
Sent from my Windows 10 phone
--
Robert Oeffner, Ph.D.
Research Associate, The Read Group
Department of Haematology,
Cambridge Institute for Medical Research
University of Cambridge
Cambridge Biomedical Campus
Wellcome Trust/MRC Building
Hills Road
Cambridge CB2 0XY
www.cimr.cam.ac.uk/investigators/read/index.html
tel: +44(0)1223 763234
mobile: +44(0)7712 887162
From: abhisek Mondal
Sent: 01 November 2016 07:39
To: [email protected]
Subject: [phenixbb] phenix fails to configure on fedora 20
Hi,
I'm using Fedora 20 on a 4 core laptop. When I tried to install phenix it gave following error.
Same version installed fine in my workstation but keep failing here.
Please help me out here.
Thanks.
[root@viralhost phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6]# ./install
==========================================================================
Phenix Installation
version: 1.10.1-2155
machine type: intel-linux-2.6
OS version: 3.19.8-100.fc20.i686
destination: /usr/local/phenix-1.10.1-2155
# of processors: 4
=========================================================================
Configuring Phenix components...
Traceback (most recent call last):
File "./bin/install.py", line 262, in <module>
installer(sys.argv[1:]).install()
File "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py", line 185, in install
self.install_from_binary()
File "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py", line 295, in install_from_binary
self.reconfigure(log=log)
File "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py", line 460, in reconfigure
call(args=args, log=log, verbose=self.options.verbose)
File "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/installer_utils.py", line 81, in call
raise RuntimeError("Call to '%s' failed with exit code %d" % (args, rc))
RuntimeError: Call to '/usr/local/phenix-1.10.1-2155/base/bin/python /usr/local/phenix-1.10.1-2155/modules/cctbx_project/libtbx/configure.py --current_working_directory /usr/local/phenix-1.10.1-2155/build --command_version_suffix 1.10.1-2155 phenix phaser solve_resolve labelit' failed with exit code 126
--
Abhisek Mondal
Research Fellow
Structural Biology and Bioinformatics Division
CSIR-Indian Institute of Chemical Biology
Kolkata 700032
INDIA
