Re: [phenixbb] strange MR problem

Thanks for the reply and suggestions. regards intekhab Alam On Tue, Dec 13, 2011 at 2:07 PM, Nathaniel Echols wrote:

On Mon, Dec 12, 2011 at 8:58 PM, intekhab alam wrote:

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i want to make one clarification here that clashes appear when i used the mtz file generated by CCP4 along with the MR solution from Phaser in Refmac 5. Refinemnet is fine in Phenix with R and Rfree of 25/30.

Sorry, I'm not sure what would cause the clashes - hopefully someone on ccp4bb will have an answer. (It could simply be a result of the X-ray/geometry weighting not being correct - a sure sign of this, regardless of program used, is excessively high RMS(bonds) and RMS(angles).) I'm glad Phenix is working though!

...

i am using Phenix 1.7.1.743.

FYI, you should update to 1.7.3 - the geometry may be significantly improved at this resolution.

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-- INTEKHAB ALAM LABORATORY OF STRUCTURAL BIOINFORMATICS KOREA UNIVERSITY, SEOUL