On Mon, Jun 3, 2013 at 7:43 PM, Mengbin Chen <mengbinc@sas.upenn.edu> wrote:
> I was able to get to the step where "scons: done building targets." showed
> up, and set up the environment by typing setenv
> /Users/yanghai/Desktop/rosetta-3.5 into the shell. I also filled out the
> "path to rosetta" in "Preferences" under "PHENIX GUI", which I believe it is
> correct. However, when I was ready to run MR-rosetta, it kept saying "cannot
> locate Rosetta programs. You may set the path in PHENIX GUI under
> preferences->Automation, or define the environment variable
> PHENIX_ROSETTA_PATH (recommended)".

You need to restart the GUI before the preferences setting will have
the intended effect. �I'll fix this so it works immediately in the
future.

-Nat
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