Hi phenixbb !!<br><br>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; I have few questions.<br><br>1. Is there any utility in phenix to write out pdb formatted (which is ready to deposit) output file.. like xtal_pdbsubmission utility in CNS.<br>2. In Autobuild wizard how to ask the program to use the Free R flags present in the file. It always generates new Free R flags during refinement.
<br>One general question.<br><br>Does the rmsd estimation (for eg. rmsd_bonds ) depends on the program we use ?? <br><br>I have been refining in CNS. then i used Autobuild wizard to build my model. when i went back to cns the rmsd of bond increased (
0.0218 A). But phenix.refine says it it 0.007A.<br><br>Thanks in advance for your kind inputs.<br><br>regards<br>john<br>