Are you sure the error is from CCP4, and not Phenix? I got this error from installing Phenix badly (IIRC).

Did you install Phenix by just moving the directory from one system to another, but which also involved changing the path? If so, it's easiest to re-run the installer:

./install --prefix=/where/you/want/to/install/phenix

http://www.phenix-online.org/pipermail/phenixbb/2008-January/000689.html

Otherwise, copying the entire directory tree, but keeping the paths the same on all systems worked for me when installing on multiple systems.

HTH

Mark

P.S. The configure.py to run would be "/cctbx_project/libtbx/configure.py" from PHENIX in that case, I guess.

On 9 March 2010 22:01, Patrick Loll <pat.loll@drexel.edu> wrote:

Hi,

This is really a ccp4-provoked question, but it relates to phaser & cctbx (I think), so I'll try here as well:

After an install of ccp4 on a MacBook Pro running Snow Leopard and on a MacPro running Leopard, the command:

source /sw*/bin/init.csh (where /sw* is either /sw64 on the machine running 10.6, or /sw on the machine running 10.5)

gives the error:

   *******************************************

   Fatal Error: Incomplete libtbx environment!
   *******************************************
   Please re-run the libtbx/configure.py command.

If I go to ...ccp4.../src/phaser/phaser-2.1.4/libtbx/ and type

python configure.py

Then it tells me that the md5 module is deprecated, and that the cool kids use hashlib instead. Does this mean that I need to go to an earlier version of python? Will that mess up other things?

Curiously, one machines giving this problem has python 2.5.1, while the other has 2.6. However, I currently have python 2.5.1 running on another machine (albeit with a slightly earlier version of ccp4) and it doesn't give me this problem.

Ideas?

Thanks,

Pat

---------------------------------------------------------------------------------------
Patrick J. Loll, Ph. D.

Professor of Biochemistry & Molecular Biology
Director, Biochemistry Graduate Program
Drexel University College of Medicine

Room 10-102 New College Building
245 N. 15th St., Mailstop 497
Philadelphia, PA  19102-1192  USA

(215) 762-7706

pat.loll@drexelmed.edu

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