Thanks to Nigel and Nat for their help. The link description did the trick.
On Mon, Apr 2, 2012 at 9:09 AM, Mario Sanches <mariosan@gmail.com> wrote:It's not shown by default. Open the Preferences, go to the "General"
> "phenix.ligand_linking" is not an option with my current installation
> (PHENIX version dev-1021). I have "phenix.ligand_identification" and "
> phenix.ligandfit" .
section, and check "Enable alpha-test programs and features", then
close and restart the GUI. The ligand linking program will be listed
in the Refinement category.
-Nat
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