I like the new version but it does not seem to have helped much. Before it shot up by 3%, this time by 2.5%.

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On 29 May 2012 13:39, Morten Groftehauge <mortengroftehauge.work@gmail.com> wrote:
My version is 1.7.3-928. I'll try downloading the nightly and see if it goes away. Don't know why I didn't think of that first.

Thanks


On 29 May 2012 12:23, Pavel Afonine <pafonine@lbl.gov> wrote:
Hi Morten,

I'm sorry about the problem.

Are you using the latest Phenix? There was a bug in phenix.refine that I fixed a while ago, and the bug behavior was very similar to what I see happening in your case.

Could you please try the latest version and see if the problem goes away? Please let me know.

Pavel


On 5/29/12 3:56 AM, Morten Groftehauge wrote:
Hi Phenixbb,

3.2A data, 110 Wilson B, I41, twinned. Imperfect inverted repeat dsDNA with 4 protein monomers, NCS not used in refinement.
If I don't include TLS I get a nice stable R-factor while RMS goes down.
If I include TLS (whether as one group per chain or as chosen by Phenix) this happens:



Density disappears around some of the DNA bases as an obvious difference. If I run Refmac with TLS it just never finishes.

While I could just refine without TLS this does make me worried that there is something wrong with my model or my data (besides being terrible).

Cheers,
Morten

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--
Morten K Grøftehauge, PhD 
Pohl Group
Durham University




--
Morten K Grøftehauge, PhD 
Pohl Group
Durham University