This means the procedure cannot resolve a clash automatically asking you to have a look. Perhaps resolving this clash involves a concerted motion of neighbor residues. Pavel On 2/17/15 1:13 AM, Smith Lee wrote:
Dear All,
In the log output of the Phenix refine, for the flipping of the N/Q/H residues before XYZ refinement, it often occurs something like "HIS ** both conformations clash, **PLEASE CHECK MANUALLY**".
Will you please tell me what will clash with 1 of the 2 conformations of the specified HIS? I have checked the specified HIS in Coot, and I still do not know what does it mean for "both conformations clash".
I am looking forward to getting a reply from you for clarification.
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