I ran the tests as requested and got an "ALL COMMAND_LINE TESTS OK" so
things appear to be working fine. I am submitting my job to a cluster using
a script that qsubs nodes=1:ppn=4,walltime=160:00:00. Then executes another
script that sources phenix, sets an export phenix_rosetta path an runs
"phenix.mr_rosetta mr_rosetta_params.eff ".
JJ
On Tue, May 10, 2011 at 9:56 PM, Thomas C. Terwilliger
wrote:
Hi Jermaine, I am sorry for the trouble! I am wondering if rosetta is working quite right? Can you possibly run the regression tests on mr_rosetta:
phenix_regression.wizards.test_command_line_rosetta_quick_tests
and see if that helps diagnose the problem? All the best, Tom T
I have been trying a standard run of mr_rosetta and I have stopped at the same point (output below). 32 folders were created in the GROUP_OF_RESCORE_MR_ROSETTA_1 folder and the mr_rosetta.log files all say that saved overall results to a .../results.pkl and the Run log file states that each job finished. But no further files were written in the Work folder under each RUN folder and I am assuming there should be a folder with my final 20 Rosetta models somewhere. Does this mean there was a failure in a subscript?
==============================================================================
Starting sub-processes Group of rescore MR rosetta:Rescoring set of rosetta models...
==============================================================================
Splitting work into 32 jobs and running with 4 processors using sh background=True in ....MR_ROSETTA_1/GROUP_OF_RESCORE_MR_ROSETTA_1
Starting job 1...Log will be: ..../MR_ROSETTA_1/GROUP_OF_RESCORE_MR_ROSETTA_1/RUN_FILE_1.log Starting job 2...Log will be: ..../MR_ROSETTA_1/GROUP_OF_RESCORE_MR_ROSETTA_1/RUN_FILE_2.log
thanks, JJ _______________________________________________ phenixbb mailing list phenixbb@phenix-online.org http://phenix-online.org/mailman/listinfo/phenixbb
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