Just to answer Pavel, the only reading of LINK records is done by an
obsolete script for converting them to .edits.
Cheers
Nigel
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Nigel W. Moriarty
Building 33R0349, Physical Biosciences Division
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709 Email : [email protected]
Fax : 510-486-5909 Web : CCI.LBL.gov
On Thu, Feb 18, 2016 at 6:26 PM, Pavel Afonine
phenix.refine does not use REMARKS.
Actually it uses some information from REMARK records (if it finds it and validates it is good, otherwise continues), such as TLS selections, twin operator, perhaps something else which I forgot.
Recently it started outputting LINK records for internally generated extra restraints, such as metal coordination or ligand linking. I can't remember if we read them back and if we do what happens if LINK defines nonexistent (obsolete) atoms.
Pavel
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