Hi,

I am using LigandFit on the GUI version of Phenix. In my electron density map there is a good density for my ligand.
And I have my ligand in pdb format. As an input to LigandFit I gave my ligand file(pdb), an MTZ file from my data processing
and my protein at some stage of refinement (@ a good R-values). I used the default settings (Resolution=0,  Minimum CC of ligand to map=0.75
and Ligand map shape=Fo-Fc) and I got a bad result. My overall CC=0.33 and Score=68.68). What shall I do to get the best solution???

Thanks all!
Hermi