Hi all

I have some trouble installing rosetta. I followed the instruction as in https://www.phenix-online.org/documentation/reference/rosetta_install.html

and everything went ok up to

% rosetta.build_phenix_interface nproc=n

but then

% rosetta.run_tests

fails with 

Rosetta command-line arguments:
  -parser:protocol /buffer/desancti/xtal/rosetta_src_2016.32.58837_bundle/main/source/src/apps/public/crystal_refinement/low_resolution_refine.xml
  -s 1yjp_rosetta_in.pdb
  -mtzfile 1yjp_rosetta_data.mtz
  -run:preserve_header
  -crystal_refine
  -parser:script_vars symmdef=1yjp_rosetta.symm
  -parser:script_vars bfactstrat=individual
  -parser:script_vars map_type=Auto
  -score:weights talaris2013_cart
  -nstruct 1

Generating 2 models on 1 processors...

DEBUG dumping error message
ERROR: Rosetta exited with status 139
stderr output:
Segmentation fault (core dumped)
Traceback (most recent call last):
  File "/buffer/desancti/xtal/phenix/phenix-1.12-2829/build/../modules/phenix/phenix/command_line/rosetta_refine.py", line 305, in <module>
    run(sys.argv[1:], create_dir=True)
  File "/buffer/desancti/xtal/phenix/phenix-1.12-2829/build/../modules/phenix/phenix/command_line/rosetta_refine.py", line 191, in run
    debug=params.output.debug)
  File "/buffer/desancti/xtal/phenix/phenix-1.12-2829/modules/phenix/phenix/rosetta/refine.py", line 313, in __init__
    self.run_jobs()
  File "/buffer/desancti/xtal/phenix/phenix-1.12-2829/modules/phenix/phenix/rosetta/refine.py", line 388, in run_jobs
    check_result(result)
  File "/buffer/desancti/xtal/phenix/phenix-1.12-2829/modules/phenix/phenix/rosetta/refine.py", line 379, in check_result
    raise RuntimeError("Aborted due to error in job %d." % result.job_id)
RuntimeError: Aborted due to error in job 1.

Any idea?

thanks

Daniele

_______________________________________________
phenixbb mailing list
phenixbb@phenix-online.org
http://phenix-online.org/mailman/listinfo/phenixbb
Unsubscribe: phenixbb-leave@phenix-online.org