hello,<br><br>I am a first time user to phenix , and I have just completed the autobuild function,. <br><br>My question may have been asked many times before, but..<br><br>The
output after the cycles of autobuild/refinement gave me a refined file
for a 2.2 Angstrom data set with an R/Rfree of .28/.32.<br>
<br>I want to take a look at the density modified maps and see what I can adjust further,  but am having trouble loading it in coot.<br><br>Am I correct in understanding that Coot can load and construct 2f0-fc maps? if so How? :  <br>

<br>exptl_fobs_phases_freeR_flags.<div id=":eg" class="ii gt">mtz<br>overall_best_denmod_map_coeffs.mtz; overall_best_refine_map_coeffs.mtz; <br><br><br>Also from reading the manual, as I understand it, the phenix.refine command will automatically generate Coot compatible maps. <br>

But if I take my autobuild.pdb file and the original mtz data file, how
can I quickly obtain the same R/Rfree, what commands would I have to
imput other than phenix.refine mtz pbd?<br><br>Also, is it possible to make 3Fo-2Fc maps?<br><br>Thanks<br>Charlie<br></div>