Hi Yuri,
You can remove hydrogens by running:
phenix.reduce --trim model_H.pdb > model_noH.pdb
Keep in mind that the calculated R factors will change slightly when
you remove the hydrogens from your model.
Jeff
On Mon, Aug 22, 2011 at 6:08 PM, Yuri
Hi Pavel, The pdb did have anisou records for H's. I believe that is because in some previous runs I had only selected chain 'A' - I left out "and not elemnt H" - which I believe caused the H's to get refined anisotropically. I am trying to get rid of the ANISOU records and Ill run refinement again. ps. I am getting ready to deposit the coordinates and I dont want to keep hydrogens in the model, how can I get rid of them? I ve been using pyMol to remove them, but pymol gets rid of all the info -including symmetry -that phenix adds...
Thanks -- Yuri Pompeu _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb