Re: [phenixbb] Option for renumber the pdb

Since you are already in Phenix - How about the option under "Model tools" called "PDB file editor"? When you open this option it asks for a pdb file, and once loaded you can select (click on) your chain.  Click "Edit" from the top bar and select "Renumber residues".  It pops up a box asking how much to increment the numbers by and produces the renumbered pdb file.  (Note - it will accept negative numbers as well) Many other options there too... Kind regards, Christina Christina R. Bourne, Ph.D. Assistant Professor Dept. of Chemistry and Biochemistry University of Oklahoma 101 Stephenson Parkway, SLSRC Rm 2610 Norman, OK 73019 Office +1 (405) 325-5348 Mobile +1 (405) 338-5616 http://faculty-staff.ou.edu/B/Christina.Bourne-1/CRBourne/Welcome.html On Wednesday, February 26, 2014 11:21 PM, Rojan Shrestha wrote: Hello, I have found the program phenix.pdbtools. Maybe, it can renumber residues of pdb. I have found the options renumber_residues options but I am unable to see the options for starting residues. I have pdb starts from 1 and want to renumber 1 into 250. Can somebody tell me how to put the option for starting residue? Regards, Rojan  _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb