On Wed, Nov 16, 2011 at 8:45 AM, Sebastiano Pasqualato <span dir="ltr">&lt;<a href="mailto:sebastiano.pasqualato@gmail.com">sebastiano.pasqualato@gmail.com</a>&gt;</span> wrote:<br><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">

<div style="word-wrap:break-word"><div>sorry guys, this might be a silly one, but I can&#39;t see where I&#39;m making the mistake.</div><div>Whenever I turn on TLS refinement, I get this error message.</div><div>And, as you can see, the Log file doesn&#39;t tell me much more.</div>

<div>I have generated the TLS groups wit the &#39;TLS groups selection&#39; tool in phenix.</div></div></blockquote><div><br></div><div>If you&#39;re using the automatic TLS partitioning, this must be a bug, because you do indeed have overlapping selections in the final parameters:</div>

<div><br></div><div>      tls = &quot;chain &#39;A&#39; and (resseq 728:777)&quot;</div><div>      tls = &quot;chain &#39;A&#39; and (resseq 777:794)&quot;</div><div> </div><div>When I changed the second 777 to 778, the problem went away.  The current code finds a somewhat different set of TLS groups, so the problem may have been fixed already.  In any case, I will modify the code that was producing the error so it actually lists the offending selections and parameter name.</div>

<div><br></div><div>-Nat</div></div>