I got the "wx._core.PyDeadObjectError" when using Phenix 1.4-3 GUI under OS X 10.5.6 for a SAD run. The program stuck at the blue window after the first step of AutoSol. Attached is the log file. Could anyone help me find out what is wrong? Thanks very much in advance!
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PHENIX distribution located in /usr/local/phenix-1.4-3/phenix
Project Details
Project Name: phenix2
Date Stamp : Thu Feb 12 01:08:25 2009
Machine : htcdemacbook-pro.local
Directory : /Users/htc/xtal/subjects/cd147se/phenix2
PDS Server Details
User : htc
Machine : 192.168.1.3
Directory : /Users/htc/xtal/subjects/cd147se/phenix2
Port : 47702
PID : 4863
WIZARD: AutoSol
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PHENIX AutoSol Thu Feb 12 01:19:23 2009
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PHENIX VERSION: 1.4 of 08-12-2008
PHENIX RELEASE_TAG : 3
PHENIX MTYPE : mac-intel-osx
PHENIX MVERSION : osx-10.5.6
LOCAL INIT: Readdatabase: True SetUpInputs: True
AutoSol
Thu Feb 12 01:19:23 2009
Gathering defaults from ['AutoBuild', 'ImportRawData', 'LigandFit', 'AutoMR']
WORKDIR: /Users/htc/xtal/subjects/cd147se/phenix2
Checking for KnownWizards: ['AutoSol', 'AutoBuild', 'ImportRawData']
Running start first time through
Setting default value of 2.5 for resolution
Setting default value of 0.5 for solvent_fraction
Setting default value of 200 for residues
Guessing sequence file is cd147_21a.seq
application method: AutoSol_start
Getting inputs on first pass...
SUMMARY Input files dataset #1
amom360_p41212_31A.sca
Traceback (most recent call last):
File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line 522, in OnGoButton
try: self.parent.OnGo()
File "/usr/local/phenix-1.4-3/phenix/wxGUI/Dialogs.py", line 470, in OnGo
gp.RunStrategy()
File "/usr/local/phenix-1.4-3/phenix/wxGUI/BMPTaskCanvas.py", line 1170, in RunStrategy
self.RunRemotely()
File "/usr/local/phenix-1.4-3/phenix/wxGUI/BMPTaskCanvas.py", line 1380, in RunRemotely
remote = frame.RemoteHostName,
File "/usr/local/phenix-1.4-3/phenix/phenix/pds_server/StrategyUtils.py", line 124, in RunStrategy
LastStrategy
File "/usr/local/phenix-1.4-3/phenix/phenix/server/PhenixClient.py", line 87, in StartProcessMaster
return self._remote_call('StartProcessMaster',arg,kw)
File "/usr/local/phenix-1.4-3/phenix/phenix/server/PhenixClient.py", line 466, in _remote_call
raise result
AssertionError: No user for ssh to machine 192.168.1.3
Traceback (most recent call last):
File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line 892, in OnTableKillFocus
self.OnTableTextEnter(event)
File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line 861, in OnTableTextEnter
(grid, cbox, ctrl, t_param, ir, ic) = self.get_event_table(event)
File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line 1204, in get_event_table
(ctrl, group_list, key_list, winszr) = self.get_ctrl_context(evtwin)
File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line 1173, in get_ctrl_context
result = self.RootWinSzr.FindInParentSizer(ctrl)
File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line 159, in FindInParentSizer
result = child.FindInParentSizer(window, child_groups, child_keys)
File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line 143, in FindInParentSizer
if (child.GetId() == SearchWinId):
File "/usr/local/phenix-1.4-3/build/mac-intel-osx/base/Python.framework/Versions/2.6/lib/python2.6/site-packages/wx-2.8-mac-ansi/wx/_core.py", line 14522, in __getattr__
raise PyDeadObjectError(self.attrStr % self._name)
wx._core.PyDeadObjectError: The C++ part of the Panel object has been deleted, attribute access no longer allowed.
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