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Thanks for everyone.
The link given by Nathaniel, works fine.
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From: Nathaniel Echols
Did you cut and paste the command or retype it? If that's the exact command, I don't know what would be wrong with the bit "ensemble_1.coords=a1.pdb", but "ensemble_1_copies_to_find" should be "ensemble_1.copies_to_find" and "componenet" should be "component" and "_mass" should be ".mass". So I wonder if the parser got confused by the other syntax errors?
Regards,
Randy Read
On 10 Sep 2009, at 17:28, r n wrote:
Hi all
I am trying to use phenix.automr to search for two component.
Tried command line...
phenix.automr data=out.sca ensemble_1.coords=a1.pdb \ ensemble_1.RMS=0.65 ensemble_1_copies_to_find=5 componenet_1_mass=25000 \ component_1.component_copies=5 ensemble_2.coords=a2.pdb \ ensemble_2.RMS=0.60 ensemble_2.copies_to_find=5 componenet_2_mass=20000 \ component_2.component_copies=5
Following errors
phenix-installer-1.4-147/phenix-1.4-147/phenix/phenix/command_line/ automr.py", line 483, in <module> run_automr=run_automr(args=sys.argv[1:]) phenix-installer-1.4-147/phenix-1.4-147/phenix/phenix/autosol/ wizard_command_line.py", line 1237, in Sorry raise AssertionError,e AssertionError: Sorry, unknown file or keyword: ensemble_1.coords=a1.pdb
Not sure , What is wrong in my command?
Also try to use the Gui, but in automr gui only seen option for data file , not for model? May I am missing something?
Thanks
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------ Randy J. Read Department of Haematology, University of Cambridge Cambridge Institute for Medical Research Tel: + 44 1223 336500 Wellcome Trust/MRC Building Fax: + 44 1223 336827 Hills Road E-mail: [email protected] Cambridge CB2 0XY, U.K. www- structmed.cimr.cam.ac.uk
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------------------- Nathaniel Echols Lawrence Berkeley Lab 510-486-5136 [email protected] _______________________________________________ phenixbb mailing list [email protected] http://www.phenix-online.org/mailman/listinfo/phenixbb