Hi Rajan, If you are using the command-line, could you send me your full input command, and possibly the log file of this particular job? Also, it would be better if you can send me your mtz file. You can send those to me off-line if you like. Thanks, Li-Wei Hung Rajan wrote:
Dear All
Greetings
I was searching for a ligand present in the active site of my protein using Ligand Search in "PHENIX"
but i stuck in between with an error :
A Python error was detected. This may be a problem with the program settings, an error in your data, or a bug; click "OK" to send a bug report to the PHENIX developers.
AttributeError : ligand_identification instance has no attribute 'connections' Traceback: File "/home/programs/linux/phenix- 1.6.1-357/cctbx_project/libtbx/thread_utils.py", line 137, in run return_value = self._target(self._args, self._kwargs, self._c)
File "/home/programs/linux/phenix-1.6.1-357/cctbx_project/libtbx/runtime_utils.py", line 55, in __call__ result = self.target()
File "/home/programs/linux/phenix-1.6.1-357/phenix/phenix/command_line/ligand_identification.py", line 1769, in __call__ identify_ligands = ligand_identification(args=list(self.args), quiet=False)
File "/home/programs/linux/phenix-1.6.1-357/phenix/phenix/command_line/ligand_identification.py", line 308, in __init__ ligand_identification.Run(self, params)
File "/home/programs/linux/phenix-1.6.1-357/phenix/phenix/command_line/ligand_identification.py", line 1454, in Run return self.connections['STOP ']
I am not able to identify the problem?
Please let me know if some one can identify the problem, i don't know whether it is a bug or problem in my files.
Thanks for your suggestions in advance.
Rajan
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