On Wed, Jan 30, 2013 at 2:43 PM, Ursula Schulze-Gahmen
Has anybody experience with the output from the brute rotation function. I ran this and it finished without complaints, but there are no output files ***.rlist or ***.sol in the directory. I cannot figure out why and how to continue now with the translation function. From the log file it seemed that there were peaks that could have been written out.
In Phenix, all of this info (regardless of what mode you ran Phaser in) is stored internally in a result object buried in the tracking directory; there are no additional output files because they're not needed here. If you want to continue to the translation function, you simply select the rotation function job from the "Use previous result" menu, set the mode to translation function, and it will extract the angles from there. Since this isn't at all obvious (and not at all like CCP4i), I will see if I can add a note to the results tab to make it clear how to proceed. -Nat