Hi Bryan,
Yes, one copy of each unique sequence is all that is necessary in the sequence file (in fact all other copies are ignored).
All the best,
Tom T


On Sep 22, 2010, at 11:37 AM, Lepore, Bryan wrote:

The single chain output from autobuild suggests that you are running with "rebuild_in_place=False", and then autobuild puts all the parts of the model that > >match one copy of your sequence from the sequence file as "chain A".

so if e.g. user thinks 2-fold NCS, and there is a protomer plus its copy in a .pdb (segid A and B) related by that 2-fold, can the input sequence file has just one string of residues for the protomer?

i.e. not one string and its copy?

-bryan
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Thomas C. Terwilliger
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Los Alamos National Laboratory
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